PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G22760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 299aa    MW: 32966.5 Da    PI: 9.3794
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G22760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.32.3e-238816921101
           DUF260  21 yfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                      ++ + +++ ++ n+++lFG++n+ ++++a+ +e+r+d+mss+ yeA+++ar+P++Ga+gv+++l++++e++ a+l++l+++l
  ORUFI01G22760.1  88 VILHgDEKVRLLNAQRLFGTRNIRRFVQATLPEKRDDLMSSIKYEAQVWARNPQSGATGVMWHLERKVERELAKLSKLRQKL 169
                      44332668999******************************************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.63767169IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-1990166IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAISPAATAS TPRWSSSSTI SACPSQAAMC ITVLDPSSEI SNHTSTAAQS PPKSGRRGGF  60
DIGDNGGRSV PCAQGAEDGV LAGVPARVIL HGDEKVRLLN AQRLFGTRNI RRFVQATLPE  120
KRDDLMSSIK YEAQVWARNP QSGATGVMWH LERKVERELA KLSKLRQKLE MCKNLAAKKS  180
ILEAKGVGVR QVTSKEQEQE RQYQACPARI SAWTLRLFVH RSACEIPISQ TESHIACMQF  240
FGRAFMAFVG QIQEEAINHE AEDAHYDFFP LQPHLVLDSP RNPHPLGRPP LTRSHNVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MYB20.0A0A0E0MYB2_ORYRU; Uncharacterized protein
STRINGLOC_Os01g39180.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1987288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.14e-10LOB domain-containing protein 7